Conferences

• 2011 MinneWebCon, St. Paul, MN, presented: “More than 1000 Words: Scripts and Techniques for Interactive Graphics.” [slides]
• 2009 MinneWebCon, St. Paul, MN, presented: “Social Connections in Scientific Research.” [slides]
• 2008 New Media Conference, Minneapolis, MN, presented: “Inferring Social Networks based on Implied Ontological Boundaries: creating architecture for participation in Life Sciences.” [pdf]
• 2008 MinneWebCon, Minneapolis, MN, presented: “Emerging Tech: tap is the new click.” [slides]
• 2006 Microbial and Plant Genomics Institute Discussion Series, St. Paul, MN, presented: “Developing an Architecture for Participation: many parts, loosely joined” [pdf]
• 2003 O’Reilly Bioinformatics and Life-sciences Conference, San Diego, CA, presented: “Computing Infrastructure for Life Sciences: confessions of an Open-Source zealot.” [ppt]
• 2002 O’Reilly Bioinformatics and Life-sciences Conference, San Diego, CA, presented: “Genomic Data Visualization” [review]
• 2000 IEEE Aerospace Conference, Bozeman, MT, presented: “Beowulf Parallel Processing for Dynamic Load-balancing” [pdf]

Courses

• UST SEIS 701-01: Bioinformatics
• Introduction to Programming: Perl for Biologists

Papers

• See Studies tab.

White Papers and Presentations

• Social Media and Bethlehem Lutheran Church [pdf]
• Google Wave: service, platform, and protocol for participation [pdf]
• Cloud Computing Services and the Data Center [slideshare]
• Personalized Bioinformatics: an intermediate step toward Singularity? [pdf]
• Connotea: collaborative thinking and emergent social systems for research [pdf]
• The Coming Singularity in Bioinformatics [pdf]
• Introduction to iNquiry: BioTeam’s Cluster deployment toolkit for Bioinformatics [pdf]
• Introduction to BioMOBY [pdf]
• Beowulf and Beyond: High Performance Computing with Commodity Hardware [pdf]